February 2026

Effective representations of protein sequences are widely recognized as a cornerstone of machine learning-based protein design. Yet, protein bioengineering poses unique challenges for sequence representation, as experimental datasets typically feature few mutations, which are either sparsely distributed across the entire sequence or densely concentrated within localized regions. This limits the ability of sequence-level representations to extract functionally meaningful signals. In addition, comprehensive comparative studies remain scarce, despite their crucial role in clarifying which representations best encode relevant information […]

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Over the last years, state-tracking tasks, particularly permutation composition, have become a testbed to understand the limits of sequence models architectures like Transformers and RNNs (linear and non-linear). However, these are often sequence-to-sequence tasks: learning to map actions (permutations) to states, which is incompatible with the next-token prediction setting commonly used to train language models. We address this gap by converting permutation composition into code via REPL traces that interleave state-reveals through prints and variable transformations. We show […]

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In predictive maintenance of equipment, deep learning-based time series anomaly detection has garnered significant attention; however, pure deep learning approaches often fail to achieve sufficient accuracy on real-world data. This study proposes a hybrid approach that integrates 64-dimensional time series embeddings from Granite TinyTimeMixer with 28-dimensional statistical features based on domain knowledge for HVAC equipment anomaly prediction tasks. Specifically, we combine time series embeddings extracted from a Granite TinyTimeMixer encoder fine-tuned with LoRA (Low-Rank Adaptation) and 28 types […]

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Datasets for the experimental evaluation of knowledge graph refinement algorithms typically contain only ground facts, retaining very limited schema level knowledge even when such information is available in the source knowledge graphs. This limits the evaluation of methods that rely on rich ontological constraints, reasoning or neurosymbolic techniques and ultimately prevents assessing their performance in large-scale, real-world knowledge graphs. In this paper, we present resource{} the first resource that provides a workflow for extracting datasets including both schema […]

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Designing a speech quality assessment (SQA) system for estimating mean-opinion-score (MOS) of multi-rate speech with varying sampling frequency (16-48 kHz) is a challenging task. The challenge arises due to the limited availability of a MOS-labeled training dataset comprising multi-rate speech samples. While self-supervised learning (SSL) models have been widely adopted in SQA to boost performance, a key limitation is that they are pretrained on 16 kHz speech and therefore discard high-frequency information present in higher sampling rates. To […]

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The Winner Determination Problem (WDP) in combinatorial auctions is NP-hard, and no existing method reliably predicts which instances will defeat fast greedy heuristics. The ML-for-combinatorial-optimization community has focused on learning to emph{replace} solvers, yet recent evidence shows that graph neural networks (GNNs) rarely outperform well-tuned classical methods on standard benchmarks. We pursue a different objective: learning to predict emph{when} a given instance is hard for greedy allocation, enabling instance-dependent algorithm selection. We design a 20-dimensional structural feature vector […]

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Current meta-learning methods are constrained to narrow task distributions with fixed feature and label spaces, limiting applicability. Moreover, the current meta-learning literature uses key terms like "universal" and "general-purpose" inconsistently and lacks precise definitions, hindering comparability. We introduce a theoretical framework for meta-learning which formally defines practical universality and introduces a distinction between algorithm-explicit and algorithm-implicit learning, providing a principled vocabulary for reasoning about universal meta-learning methods. Guided by this framework, we present TAIL, a transformer-based algorithm-implicit meta-learner […]

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We develop an interpolation-based reduced-order modeling framework for parameter-dependent partial differential equations arising in control, inverse problems, and uncertainty quantification. The solution is discretized in the physical domain using finite element methods, while the dependence on a finite-dimensional parameter is approximated separately. We establish existence, uniqueness, and regularity of the parametric solution and derive rigorous error estimates that explicitly quantify the interplay between spatial discretization and parameter approximation. In low-dimensional parameter spaces, classical interpolation schemes yield algebraic convergence […]

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Hi, I’m looking for somebody who would be interested in jointly implementing a reduced version of MuZero over the next few weeks. I’m not sure yet if it’s computationally feasible within a reasonable budget, but the original paper shows some analyses for Ms. Pacman. Breaking down the algorithm in individual pieces, and step-by-step adding more sophistication so that eventually it leads to reproducing some of original analyses for that one environment could be an aspirational goal. Ideally, I […]

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